Knockdown:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
In Vivo:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Transduction:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
shRNA:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Injection:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Limiting Dilution Assay:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Western Blot:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Clonogenic Assay:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Tube Formation Assay:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Expressing:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Passaging:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Control:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Viability Assay:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Reporter Assay:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Marker:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Quantitative RT-PCR:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Phospho-proteomics:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Incubation:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Comparison:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Gene Expression:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Activity Assay:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Fluorescence:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Sequencing:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Dot Blot:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
In Vitro:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Recombinant:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Immunoprecipitation:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Negative Control:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Knock-In:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Mass Spectrometry:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Quantitation Assay:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
Protein Quantitation:
Article Title: SFPQ-TFE3 reciprocally regulates mTORC1 and induces lineage plasticity in a mouse model of renal tumorigenesis
Article Snippet: 4E-BP1 (#9644 CST; 1:2000), CTSK (#ab19027 Abcam; 1:1000), FLCN (#3697 CST; 1:1000), GAPDH (#5174 CST; 1:1000), GATA3(#5852 CST; 1:500), GPNMB (#38313 CST; 1:1000), GPNMB (Mouse specific) (#90205 CST; 1:1000), Histone-3 (#4499 CST; 1:4000), HNF4A (#3113 CST; 1:500), Keratin 8 (#ab53280 Abcam; 1:1000), LC3 A, B (#12741 CST; 1:2000), MelanA (#ab210546 Abcam; 1:1000), PAX2 (#9666 CST; 1:500), PAX8 (#59019 CST; 1:500), PMEL (#ab137078 Abcam; 1:1000), Phospho-p70 S6 Kinase (Thr389) (#9205 CST; 1:1000), p70 S6 Kinase (#9202 CST; 1:1000), Phospho-S6 Ribosomal Protein (Ser235/236) (#4858 CST; 1:2000), Phospho-4E BP1 (Ser65) (#9451 CST; 1:2000), Phospho-4E BP1 (Thr37/46) (#2855 CST; 1:1000), p-TFEB(S122) (#86843 CST; 1:2000), p-TFEB(S211) (#37681 CST; 1:2000), Pan-Keratin (Type1) (#83957 CST; 1:1000), RAB7 (#9367 CST; 1:1000), RHEB (#13879 CST; 1:1000), RRAGC (#9480 CST; 1:1000), RRAGD (#4470 CST; 1:1000), Synaptophysin (#5461 CST; 1:1000), S6 Ribosomal Protein (#2317 CST; 1:2000), TFE3 (#14779 CST; 1:4000), TFE3 (#ABE1400 Sigma; 1:4000), TFEB (#4240 CST; 1:2000), WT1 (#83535 CST; 1:1000), Ub (#43124 CST; 1:1000), LAMTOR1 (#8975 CST; 1:1000), RAPTOR (#2280 CST; 1:1000), ATP6V1A (#39517 CST; 1:1000), ATP6V1B1 (#sc-55544 Santa Cruz; 1:500), ATP6V0C (# PA116676 Thermo Fisher; 1:500), ATP6V1C1 (#sc-271077 Santa Cruz; 1:500), ATP6V0D1 (#sc-393322 Santa Cruz; 1:500), ATP6V0D2 (# PA598618 Thermo Fisher; 1:500), ATP6V1G1 (#sc-25333 Santa Cruz; 1:500), ATP6V1H (#sc-166227 Santa Cruz; 1:500), HA-Tag (#3724 CST; 1:1000).
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